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  5. LOC_Os08g30480.1

LOC_Os08g30480.1 (LOC_Os08g30480)


Aliases : LOC_Os08g30480

Description : small subunit sigma of AP-4 vacuole cargo adaptor complex


Gene families : OG0006894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g30480.1

Target Alias Description ECC score Gene Family Method Actions
AT2G19790 No alias SNARE-like superfamily protein 0.02 OrthoFinder output from all 47 species
Cre07.g330950 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.01 OrthoFinder output from all 47 species
Dcu_g13953 No alias small subunit sigma of AP-4 vacuole cargo adaptor... 0.06 OrthoFinder output from all 47 species
Lfl_g19338 No alias small subunit sigma of AP-4 vacuole cargo adaptor... 0.03 OrthoFinder output from all 47 species
MA_23830g0010 No alias AP-4 complex subunit sigma OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_9040447g0010 No alias AP-4 complex subunit sigma OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp6g09610.1 No alias small subunit sigma of AP-4 vacuole cargo adaptor complex 0.03 OrthoFinder output from all 47 species
Msp_g00833 No alias small subunit sigma of AP-4 vacuole cargo adaptor... 0.04 OrthoFinder output from all 47 species
Ore_g10754 No alias small subunit sigma of AP-4 vacuole cargo adaptor... 0.02 OrthoFinder output from all 47 species
Zm00001e022339_P001 Zm00001e022339 small subunit sigma of AP-4 vacuole cargo adaptor complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 3 141
No external refs found!