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  5. LOC_Os08g28800.1

LOC_Os08g28800.1 (ASK1, ATSKP1, UIP1,...)


Aliases : ASK1, ATSKP1, UIP1, SKP1, SKP1A, LOC_Os08g28800

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g28800.1

Target Alias Description ECC score Gene Family Method Actions
AT4G34470 SK12, ASK12 SKP1-like 12 0.04 OrthoFinder output from all 47 species
Aop_g55744 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.20G070900.1 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.20G071800.1 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.20G072300.1 ASK2, SKP1B,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001187.19 ASK2, SKP1B Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g39230 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
MA_121410g0010 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
MA_85930g0010 ASK2, SKP1B target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
Pir_g61945 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Pnu_g01093 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ppi_g09622 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Smo98727 ASK1, ATSKP1,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 119 166
IPR016073 Skp1_comp_POZ 10 69
No external refs found!