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  5. LOC_Os08g28180.1

LOC_Os08g28180.1 (LOC_Os08g28180)


Aliases : LOC_Os08g28180

Description : Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana (sp|q0wp85|pp150_arath : 523.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g28180.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00209480 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
AMTR_s00019p00029790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00023p00240990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55630... 0.01 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.02 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.02 OrthoFinder output from all 47 species
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.05 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.02 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.04 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.04 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G15200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G62470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27701.t1 EMB2261, Aspi01Gene27701 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64236.t1 Aspi01Gene64236 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04707 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.06 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 OrthoFinder output from all 47 species
Gb_12874 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.03 OrthoFinder output from all 47 species
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_20376 No alias group-II intron mitochondrial splicing factor (MISF68) 0.03 OrthoFinder output from all 47 species
Gb_21477 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 OrthoFinder output from all 47 species
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.06 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
Lfl_g07415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_69152g0010 MEE40 Pentatricopeptide repeat-containing protein At3g53700,... 0.01 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.11 OrthoFinder output from all 47 species
Msp_g20709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g18059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g34573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo91306 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 427 474
IPR002885 Pentatricopeptide_repeat 205 254
IPR033443 PPR_long 269 413
No external refs found!