Aliases : ATCRS1, CRS1, LOC_Os08g27150
Description : CRS1 plastidial RNA splicing factor
Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00028p00245370 | ATCFM2, CFM2,... | RNA processing.organelle machineries.RNA... | 0.02 | OrthoFinder output from all 47 species | |
AT3G01370 | ATCFM2, CFM2 | CRM family member 2 | 0.03 | OrthoFinder output from all 47 species | |
AT3G23070 | ATCFM3A, CFM3A | CRM family member 3A | 0.04 | OrthoFinder output from all 47 species | |
AT4G29750 | No alias | CRS1 / YhbY (CRM) domain-containing protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g022878 | ATCFM3A, CFM3A | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g21267 | ATCFM2, CFM2 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ala_g25788 | ATCFM2, CFM2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g27469 | ATCFM2, CFM2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g03895 | ATCFM3A, CFM3A | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aop_g25751 | ATCFM2, CFM2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene12969.t1 | ATCFM3A, CFM3A,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0004.g008527 | ATCFM2, CFM2 | not classified & original description: CDS=155-3025 | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0015.g013833 | ATCFM2, CFM2 | not classified & original description: CDS=1-3243 | 0.02 | OrthoFinder output from all 47 species | |
Cba_g11329 | ATCFM2, CFM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g16678 | ATCFM3A, CFM3A | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ceric.05G053300.1 | ATCFM2, CFM2,... | not classified & original description: pacid=50577844... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.31G056300.1 | ATCFM2, CFM2,... | not classified & original description: pacid=50573909... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g18891 | ATCFM2, CFM2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g25274 | ATCFM2, CFM2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01018109001 | ATCFM3A, CFM3A | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01031001001 | ATCRS1, CRS1 | RNA processing.organelle machineries.RNA... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01032542001 | ATCFM2, CFM2 | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
Gb_37638 | ATCFM3A, CFM3A | CFM2-type plastidial RNA splicing factor. CFM3-type... | 0.03 | OrthoFinder output from all 47 species | |
Len_g08834 | ATCFM2, CFM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g05744 | ATCFM3A, CFM3A | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
MA_10432072g0010 | ATCFM3A, CFM3A | CFM2-type plastidial RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
Mp3g06280.1 | ATCFM2, CFM2 | CRM-domain containing factor CFM3,... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g27066 | ATCFM2, CFM2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g31203 | ATCFM2, CFM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g35546 | ATCFM2, CFM2 | plastidial RNA splicing factor *(CFM2) & original... | 0.04 | OrthoFinder output from all 47 species | |
Pir_g18629 | ATCFM2, CFM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g06510 | EMB1865 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g29461 | ATCFM2, CFM2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g08382 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g28510 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g44953 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g52089 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Smo120007 | No alias | CRM-domain containing factor CFM3,... | 0.03 | OrthoFinder output from all 47 species | |
Smo20706 | EMB1865 | CRM-domain containing factor CFM3,... | 0.02 | OrthoFinder output from all 47 species | |
Smo412905 | No alias | CRM-domain containing factor CFM3,... | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g119450.3.1 | EMB1865, Solyc03g119450 | CRM-domain containing factor CFM3,... | 0.03 | OrthoFinder output from all 47 species | |
Solyc07g039500.4.1 | Solyc07g039500 | CRM-domain containing factor CFM3,... | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g083350.3.1 | ATCFM3A, CFM3A,... | CFM3-type plastidial RNA splicing factor | 0.03 | OrthoFinder output from all 47 species | |
Spa_g38741 | ATCFM2, CFM2 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e011272_P001 | ATCFM3A, CFM3A,... | CFM3-type plastidial RNA splicing factor | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e032339_P002 | EMB1865, Zm00001e032339 | CRM-domain containing factor CFM3,... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e033939_P001 | Zm00001e033939 | CRM-domain containing factor CFM3,... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000160 | phosphorelay signal transduction system | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
BP | GO:0007165 | signal transduction | IEP | HCCA |
MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | HCCA |
MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | HCCA |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | HCCA |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | HCCA |
BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | HCCA |
BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
No external refs found! |