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  5. LOC_Os08g25799.1

LOC_Os08g25799.1 (LOC_Os08g25799)


Aliases : LOC_Os08g25799

Description : G2-like GARP transcription factor


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g25799.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00053860 KAN, KAN1,... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00095620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AMTR_s00095p00071020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AT4G13640 UNE16 Homeodomain-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g023997 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g052692 No alias transcription factor *(CLAUSA) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g057577 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aev_g04653 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aev_g36053 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g10728 KAN, KAN1 KANADI-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Als_g15748 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04205 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g04536 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g22498 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene24371.t1 Aspi01Gene24371 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene42938.t1 Aspi01Gene42938 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g05727 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g16380 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G015300.1 Ceric.07G015300 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.12G033500.1 PHL1, Ceric.12G033500 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g14921 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g16003 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g16004 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ehy_g32284 KAN4, ATS KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007065001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os02g46940.1 KAN2, LOC_Os02g46940 G2-like GARP transcription factor 0.07 OrthoFinder output from all 47 species
Len_g05409 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Len_g09088 KAN2 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01284 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Lfl_g01611 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Lfl_g01961 PHR1, AtPHR1 transcription factor *(PHR1) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24340 PHL1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Msp_g37137 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g05922 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06354 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Pnu_g24931 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g02804 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g39079 KAN, KAN1 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010896 No alias transcription factor *(CLAUSA) & original description: CDS=80-784 0.02 OrthoFinder output from all 47 species
Sam_g08412 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g12596 No alias transcription factor *(CLAUSA) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g18448 No alias KANADI-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g19047 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Sam_g40619 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g40620 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Smo405399 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 OrthoFinder output from all 47 species
Solyc04g015290.3.1 Solyc04g015290 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Solyc04g050070.3.1 PHL1, Solyc04g050070 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g066340.4.1 KAN2, Solyc06g066340 G2-like GARP transcription factor 0.1 OrthoFinder output from all 47 species
Spa_g31282 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e004300_P003 Zm00001e004300 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e007585_P001 Zm00001e007585 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e009653_P001 Zm00001e009653 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e023282_P002 KAN2, Zm00001e023282 G2-like GARP transcription factor 0.06 OrthoFinder output from all 47 species
Zm00001e033757_P002 Zm00001e033757 G2-like GARP transcription factor 0.07 OrthoFinder output from all 47 species
Zm00001e035893_P001 Zm00001e035893 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 37 87
IPR025756 Myb_CC_LHEQLE 129 174
No external refs found!