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  5. LOC_Os08g25060.1

LOC_Os08g25060.1 (LOC_Os08g25060)


Aliases : LOC_Os08g25060

Description : subunit TFB1 of multifunctional TFIIh complex. component TFB1 of TFIIh basal transcription factor complex. transcription factor (BSD)


Gene families : OG0004762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g25060.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g09652 No alias component *(TFB1) of TFIIh basal transcription factor... 0.05 OrthoFinder output from all 47 species
Ala_g14658 No alias component *(TFB1) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Aspi01Gene34626.t1 Aspi01Gene34626 component *(TFB1) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Ceric.22G065100.1 Ceric.22G065100 component *(TFB1) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Cre10.g466550 No alias RNA biosynthesis.transcriptional activation.BSD... 0.01 OrthoFinder output from all 47 species
Dde_g02887 No alias component *(TFB1) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Lfl_g05551 No alias component *(TFB1) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species
MA_189466g0010 No alias subunit TFB1 of multifunctional TFIIh complex. component... 0.03 OrthoFinder output from all 47 species
Mp7g14080.1 No alias subunit TFB1 of multifunctional TFIIh complex. component... 0.02 OrthoFinder output from all 47 species
Solyc10g005900.3.1 Solyc10g005900 subunit TFB1 of multifunctional TFIIh complex. component... 0.05 OrthoFinder output from all 47 species
Tin_g01127 No alias component *(TFB1) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
InterPro domains Description Start Stop
IPR005607 BSD_dom 206 255
No external refs found!