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  5. LOC_Os08g23430.1

LOC_Os08g23430.1 (RNEE/G, LOC_Os08g23430)


Aliases : RNEE/G, LOC_Os08g23430

Description : endoribonuclease (RNase E)


Gene families : OG0005953 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005953_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g23430.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00182640 RNEE/G,... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
AT2G04270 RNEE/G RNAse E/G-like 0.06 OrthoFinder output from all 47 species
Aev_g13689 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15885 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G007300.1 RNEE/G, Ceric.10G007300 endoribonuclease *(RNase E) & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g48453 RNEE/G endoribonuclease *(RNase E) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g30754 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10909g0010 RNEE/G endoribonuclease (RNase E) 0.05 OrthoFinder output from all 47 species
Mp7g15630.1 RNEE/G endoribonuclease (RNase E) 0.07 OrthoFinder output from all 47 species
Nbi_g38545 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01412 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012913 RNEE/G endoribonuclease *(RNase E) & original description: CDS=84-3941 0.03 OrthoFinder output from all 47 species
Sam_g26698 No alias endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g083140.3.1 RNEE/G, Solyc02g083140 endoribonuclease (RNase E) 0.1 OrthoFinder output from all 47 species
Zm00001e003867_P004 RNEE/G, Zm00001e003867 endoribonuclease (RNase E) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002044 CBM_fam20 114 192
IPR019307 RNA-bd_AU-1/RNase_E/G 658 937
No external refs found!