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  5. LOC_Os08g22354.1

LOC_Os08g22354.1 (PAB2, PABP2, ATPAB2,...)


Aliases : PAB2, PABP2, ATPAB2, LOC_Os08g22354

Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os08g22354.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g021697 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Dde_g05354 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07805 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017930 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e009430_P002 PAB2, PABP2,... mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Zm00001e033592_P004 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Zm00001e041182_P002 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002004 PABP_HYD 568 634
IPR000504 RRM_dom 41 111
IPR000504 RRM_dom 323 392
IPR000504 RRM_dom 220 288
IPR000504 RRM_dom 129 197
No external refs found!