LOC_Os08g19650.1 (KNAT3, LOC_Os08g19650)

Aliases : KNAT3, LOC_Os08g19650

Description : transcription factor (KNOX)

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g19650.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00169620	KNAT6, KNAT6L,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
Adi_g017500	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058539	KNAT6, KNAT6L, KNAT6S	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g098728	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g13443	KNAT3	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g08926	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g30189	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000431	KNAT7, IXR11	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009595	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: CDS=1-1050	0.04	OrthoFinder output from all 47 species
Azfi_s0022.g016023	KNAT6, KNAT6L, KNAT6S	not classified & original description: CDS=247-1020	0.03	OrthoFinder output from all 47 species
Azfi_s0574.g078063	KNAT3	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cba_g05224	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.21G023400.1	KNAT3, Ceric.21G023400	KNOX-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g03334	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g16830	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g03972	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g06220	KNAT7, IXR11	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01004811001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01012897001	KNAT3	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01013790001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01018257001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01030488001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01031241001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01035921001	KNAT3	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
LOC_Os07g03770.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.07	OrthoFinder output from all 47 species
Len_g00731	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10428446g0010	BP, BP1, KNAT1	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Msp_g06929	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g07720	KNAT4	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g11713	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29053	KNAT3	KNOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g36039	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g25018	KNAT6, KNAT6L, KNAT6S	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g02102	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17826	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g20569	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c18_18720V3.1	BUM1, SHL, STM,...	KNOTTED-like from Arabidopsis thaliana 2	0.02	OrthoFinder output from all 47 species
Pp3c19_5620V3.1	BP, BP1, KNAT1,...	KNOTTED-like from Arabidopsis thaliana 2	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004352	KNAT4	KNOX-type transcription factor & original description: CDS=1-1356	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633	KNAT7, IXR11	not classified & original description: CDS=1-1266	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018785	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Smo135843	KNAT4	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
Solyc01g100510.4.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Solyc02g081120.4.1	BUM1, SHL, STM,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Solyc12g010410.3.1	KNAT4, Solyc12g010410	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Spa_g24646	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g40064	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08137	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g30670	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e005825_P002	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.05	OrthoFinder output from all 47 species
Zm00001e013853_P001	KNAT3, Zm00001e013853	transcription factor (KNOX)	0.07	OrthoFinder output from all 47 species
Zm00001e027562_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e029453_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	174	195
IPR008422	Homeobox_KN_domain	214	253
IPR005540	KNOX1	12	53
IPR005541	KNOX2	71	118

External Links

No external refs found!

LOC_Os08g19650.1 (KNAT3, LOC_Os08g19650)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation