LOC_Os08g15306.1 (RPL20, LOC_Os08g15306)

Aliases : RPL20, LOC_Os08g15306

Description : component psRPL20 of large ribosomal subunit proteome

Gene families : OG0003165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g15306.1

Target	Alias	Description	ECC score	Gene Family Method
ATCG00660	RPL20	ribosomal protein L20	0.04	OrthoFinder output from all 47 species
Aev_g04289	RPL20	component *(bL20c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aob_g02357	RPL20	component *(bL20c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.02G015300.1	RPL20, Ceric.02G015300	component *(bL20c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.05G050900.1	RPL20, Ceric.05G050900	component *(bL20c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.38G007800.1	RPL20, Ceric.38G007800	component *(bL20c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
LOC_Os10g21314.1	RPL20, LOC_Os10g21314	component psRPL20 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Solyc00g180440.1.1	RPL20, Solyc00g180440	component psRPL20 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Solyc02g069840.3.1	Solyc02g069840	component mtRPL20 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	HCCA
MF	GO:0016157	sucrose synthase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005813	Ribosomal_L20	3	109

External Links

No external refs found!

LOC_Os08g15306.1 (RPL20, LOC_Os08g15306)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation