1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os08g15246.1

LOC_Os08g15246.1 (RPS7.1, RPS7, LOC_Os08g15246)


Aliases : RPS7.1, RPS7, LOC_Os08g15246

Description : component psRPS7 of small ribosomal subunit proteome


Gene families : OG0003075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003075_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g15246.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT2G07696 No alias Ribosomal protein S7p/S5e family protein 0.05 OrthoFinder output from all 47 species
ATCG00900 RPS7.1, RPS7 Ribosomal protein S7p/S5e family protein 0.46 OrthoFinder output from all 47 species
ATCG01240 RPS7.2 ribosomal protein S7 0.46 OrthoFinder output from all 47 species
ATMG01270 RPS7 mitochondrial ribosomal protein S7 0.05 OrthoFinder output from all 47 species
Aev_g27286 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.32 OrthoFinder output from all 47 species
Ala_g14003 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Als_g16999 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Aob_g04218 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.2 OrthoFinder output from all 47 species
Aob_g13505 No alias component *(uS7m) of small mitoribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Aop_g15514 No alias component *(uS7m) of small mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cba_g04878 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Cba_g25480 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.05G040200.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.05G043200.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Ceric.06G028500.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.09G049800.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Ceric.18G054300.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Ceric.22G078200.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Ceric.28G052400.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ceric.29G003200.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Ceric.30G067800.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.33G038600.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Ceric.34G004700.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.36G044900.1 RPS7.1, RPS7,... component *(uS7c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Dcu_g21132 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g00362 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Dde_g22546 No alias component *(uS7m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Gb_04094 No alias Ribosomal protein S7, mitochondrial OS=Marchantia... 0.05 OrthoFinder output from all 47 species
Gb_15254 No alias Ribosomal protein S7, mitochondrial OS=Triticum aestivum... 0.08 OrthoFinder output from all 47 species
Gb_26489 No alias Ribosomal protein S7, mitochondrial OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_32443 RPS7.1, RPS7 component psRPS7 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Gb_34448 No alias Ribosomal protein S7, mitochondrial OS=Triticum aestivum... 0.06 OrthoFinder output from all 47 species
Gb_37211 No alias Ribosomal protein S7, mitochondrial OS=Marchantia... 0.07 OrthoFinder output from all 47 species
LOC_Os12g34045.1 LOC_Os12g34045 component mtRPS7 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Len_g01016 No alias component *(uS7m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g03137 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.32 OrthoFinder output from all 47 species
Lfl_g06400 No alias not classified & original description: none 0.19 OrthoFinder output from all 47 species
MA_14711g0030 RPS7.1, RPS7 component psRPS7 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Nbi_g22080 No alias component *(uS7m) of small mitoribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Pir_g04718 No alias component *(uS7m) of small mitoribosomal-subunit... 0.28 OrthoFinder output from all 47 species
Pir_g06433 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Pnu_g01695 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g00356 No alias component *(uS7m) of small mitoribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Sam_g03315 No alias component *(uS7c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Spa_g02161 No alias component *(uS7m) of small mitoribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Spa_g19770 RPS7.1, RPS7 component *(uS7c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Tin_g12479 No alias component *(uS7m) of small mitoribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Zm00001e039873_P001 RPS7.1, RPS7,... component psRPS7 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Zm00001e042090_P001 RPS7.1, RPS7,... component psRPS7 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Zm00001e042267_P001 RPS7.1, RPS7,... component psRPS7 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Zm00001e042356_P001 RPS7.1, RPS7,... component psRPS7 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Zm00001e042499_P001 RPS7.1, RPS7,... component psRPS7 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 1 150
No external refs found!