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  5. LOC_Os08g15040.1

LOC_Os08g15040.1 (ATARL1, ARF3, ARL1,...)


Aliases : ATARL1, ARF3, ARL1, LOC_Os08g15040

Description : ARF-GTPase


Gene families : OG0006121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g15040.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT2G24765 ATARL1, ARF3, ARL1 ADP-ribosylation factor 3 0.1 OrthoFinder output from all 47 species
Adi_g087315 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07652 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16371 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02783 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001093.2 ATARL1, ARF3, ARL1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
Cre12.g535900 ATARL1, ARF3, ARL1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 OrthoFinder output from all 47 species
Dac_g04512 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g34242 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_25641 ATARL1, ARF3, ARL1 ARF-GTPase 0.03 OrthoFinder output from all 47 species
Lfl_g15269 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12723 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06067 ATARL1, ARF3, ARL1 ARF-GTPase *(ARFE) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc07g006640.3.1 ATARL1, ARF3,... ARF-GTPase 0.05 OrthoFinder output from all 47 species
Zm00001e021566_P001 ATARL1, ARF3,... ARF-GTPase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 6 176
No external refs found!