LOC_Os08g14230.1 (VLN4, ATVLN4, LOC_Os08g14230)


Aliases : VLN4, ATVLN4, LOC_Os08g14230

Description : villin actin-crosslinking factor


Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g14230.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00248490 ATVLN2, VLN2,... Cytoskeleton.microfilament network.actin... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00238270 VLN4, ATVLN4,... Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
Aev_g02570 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12394 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40168 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09197.t1 ATVLN2, VLN2,... villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.33G042500.1 VLN4, ATVLN4,... villin actin-crosslinking factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g07151 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10002 ATVLN3, VLN3 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033261001 ATVLN2, VLN2 Cytoskeleton.microfilament network.actin... 0.02 OrthoFinder output from all 47 species
Gb_23115 VLN4, ATVLN4 villin actin-crosslinking factor 0.06 OrthoFinder output from all 47 species
Gb_29105 ATVLN3, VLN3 villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
Gb_29107 ATVLN3, VLN3 villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
LOC_Os06g44890.1 VLN4, ATVLN4,... villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
MA_10429481g0030 VLN4, ATVLN4 villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
MA_10430359g0040 ATVLN3, VLN3 villin actin-crosslinking factor 0.07 OrthoFinder output from all 47 species
MA_61502g0010 VLN4, ATVLN4 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g31948 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo177604 ATVLN2, VLN2 Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
Spa_g09598 ATVLN3, VLN3 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15028 ATVLN3, VLN3 villin acTin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001712_P002 ATVLN2, VLN2,... villin actin-crosslinking factor 0.02 OrthoFinder output from all 47 species
Zm00001e038175_P001 ATVLN2, VLN2,... villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 274 339
IPR007123 Gelsolin-like_dom 152 218
IPR007123 Gelsolin-like_dom 28 111
No external refs found!