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  5. LOC_Os08g08760.1

LOC_Os08g08760.1 (LOC_Os08g08760)


Aliases : LOC_Os08g08760

Description : Polyubiquitin 3 OS=Oryza sativa subsp. japonica (sp|q58g87|ubq3_orysj : 157.0)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g08760.1

Target Alias Description ECC score Gene Family Method Actions
AT1G53930 No alias Ubiquitin-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G09790 UBQ8 ubiquitin 8 0.01 OrthoFinder output from all 47 species
Als_g09276 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31640 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g58521 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g42424.1 UBQ4, LOC_Os05g42424 ubiquitin-fold protein (UBQ) 0.03 OrthoFinder output from all 47 species
LOC_Os10g34990.1 LOC_Os10g34990 component RPS27a of SSU proteome 0.01 OrthoFinder output from all 47 species
Len_g14650 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27536 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
MA_10431748g0010 No alias Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Pir_g02100 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009126_P001 UBQ11, Zm00001e009126 Polyubiquitin (Fragment) OS=Acetabularia peniculus... 0.06 OrthoFinder output from all 47 species
Zm00001e021401_P001 UBQ11, Zm00001e021401 Polyubiquitin 3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 116 187
No external refs found!