1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os08g07960.1

LOC_Os08g07960.1 (LOC_Os08g07960)


Aliases : LOC_Os08g07960

Description : RAE1 scaffold nucleoporin of nuclear pore complex


Gene families : OG0004854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004854_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g07960.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.115 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.01 OrthoFinder output from all 47 species
Cre06.g278097 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030176 obsolete integral component of endoplasmic reticulum membrane IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 25 50
IPR001680 WD40_repeat 64 93
IPR001680 WD40_repeat 229 268
IPR001680 WD40_repeat 107 136
No external refs found!