LOC_Os08g07480.1 (DRD2, NRPE2, NRPD2A,...)

Aliases : DRD2, NRPE2, NRPD2A, NRPD2, DMS2, LOC_Os08g07480

Description : subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V RNA polymerase

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g07480.1
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AT3G23780	DRD2, NRPE2,...	nuclear RNA polymerase D2A	0.02	OrthoFinder output from all 47 species
Aspi01Gene14104.t1	NRPD2B, Aspi01Gene14104	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Gb_31802	DRD2, NRPE2,...	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.02	OrthoFinder output from all 47 species
MA_10434923g0010	NRPD2B	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.03	OrthoFinder output from all 47 species
Nbi_g03843	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Spa_g27723	EMB1989, RPB2, NRPB2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e018008_P001	EMB1989, RPB2,...	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e040144_P001	DRD2, NRPE2,...	DNA-directed RNA polymerases IV and V subunit 2...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007644	RNA_pol_bsu_protrusion	140	523
IPR007647	RNA_pol_Rpb2_5	724	772
IPR007646	RNA_pol_Rpb2_4	648	709
IPR007642	RNA_pol_Rpb2_2	316	475
IPR007120	DNA-dir_RNAP_su2_dom	780	1150
IPR007645	RNA_pol_Rpb2_3	552	613
IPR007641	RNA_pol_Rpb2_7	1152	1254

External Links

No external refs found!

LOC_Os08g07480.1 (DRD2, NRPE2, NRPD2A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation