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  5. LOC_Os08g06440.1

LOC_Os08g06440.1 (LOC_Os08g06440)


Aliases : LOC_Os08g06440

Description : Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica (sp|q0jai9|scam6_orysj : 288.0)


Gene families : OG0001155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06440.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G03550 No alias Secretory carrier membrane protein (SCAMP) family protein 0.01 OrthoFinder output from all 47 species
AT1G32050 No alias SCAMP family protein 0.02 OrthoFinder output from all 47 species
Ala_g01553 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Als_g08101 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Als_g23925 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Ceric.06G044300.1 Ceric.06G044300 regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Ceric.27G044000.1 Ceric.27G044000 regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Cre02.g089900 No alias Secretory carrier-associated membrane protein 5 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Dcu_g02657 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.04 OrthoFinder output from all 47 species
GSVIVT01012985001 No alias Secretory carrier-associated membrane protein 4... 0.03 OrthoFinder output from all 47 species
GSVIVT01030566001 No alias Secretory carrier-associated membrane protein 1... 0.02 OrthoFinder output from all 47 species
LOC_Os01g57220.1 LOC_Os01g57220 Secretory carrier-associated membrane protein 2 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Mp2g20380.1 SC3 Putative secretory carrier-associated membrane protein 1... 0.02 OrthoFinder output from all 47 species
Nbi_g05251 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Pir_g00864 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Pir_g12817 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Ppi_g11149 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Ppi_g15914 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Sam_g16122 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Sam_g18428 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Smo141352 No alias Secretory carrier-associated membrane protein 1 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Solyc10g008550.3.1 Solyc10g008550 Secretory carrier-associated membrane protein 2 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Solyc10g009180.3.1 SC3, Solyc10g009180 Secretory carrier-associated membrane protein 3... 0.03 OrthoFinder output from all 47 species
Zm00001e004899_P001 SC3, Zm00001e004899 Secretory carrier-associated membrane protein 4 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e012486_P001 SC3, Zm00001e012486 Secretory carrier-associated membrane protein 4 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e015529_P002 Zm00001e015529 Secretory carrier-associated membrane protein 6 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Zm00001e027375_P001 Zm00001e027375 Secretory carrier-associated membrane protein 3 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e035266_P003 Zm00001e035266 Secretory carrier-associated membrane protein 1 OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR007273 SCAMP 71 241
No external refs found!