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  5. LOC_Os08g06344.2

LOC_Os08g06344.2 (LOC_Os08g06344)


Aliases : LOC_Os08g06344

Description : RNA helicase (Prp5)


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06344.2
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Adi_g085078 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g25101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28448 No alias RNA helicase *(RCF1) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g01055 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06489 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09244 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g49748 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16955 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g02860 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g05302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30017 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g40579 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52675 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo178562 No alias RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Spa_g12514 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 661 766
IPR011545 DEAD/DEAH_box_helicase_dom 449 620
No external refs found!