LOC_Os08g06120.1 (NGA1, LOC_Os08g06120)


Aliases : NGA1, LOC_Os08g06120

Description : transcription factor (RAV/NGATHA)


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06120.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.06 OrthoFinder output from all 47 species
AMTR_s00018p00040300 NGA1,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.04 OrthoFinder output from all 47 species
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
AT2G46870 NGA1 AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g058439 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Adi_g058440 EDF3 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Adi_g114045 NGA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32030 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Aev_g44854 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Als_g17658 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene28731.t1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0102.g044523 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Cba_g71540 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ceric.11G039200.1 EDF4, RAV1,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ceric.20G072500.1 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.05 OrthoFinder output from all 47 species
Ceric.20G072600.1 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ceric.22G022700.1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dac_g39956 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dac_g43760 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g04025 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g00006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02670 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g16987 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01011947001 EDF2, AtRAV2,... RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01019699001 NGA1 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.07 OrthoFinder output from all 47 species
GSVIVT01036447001 EDF4, RAV1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
Gb_18035 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 OrthoFinder output from all 47 species
Gb_38819 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
LOC_Os05g47650.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.09 OrthoFinder output from all 47 species
LOC_Os11g05740.1 LOC_Os11g05740 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
LOC_Os12g06080.1 LOC_Os12g06080 transcription factor (RAV/NGATHA) 0.05 OrthoFinder output from all 47 species
Len_g48063 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g57809 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g21540 NGA1 RAV/NGATHA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g27528 NGA1 RAV/NGATHA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10428163g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
MA_178646g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
MA_246350g0010 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_3834g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
MA_5039g0010 NGA1 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
MA_70029g0010 NGA1 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Nbi_g11598 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g33705 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Pir_g49278 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g19474 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Sam_g30092 No alias AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Solyc04g007000.2.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Solyc05g009790.1.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Solyc10g083210.2.1 Solyc10g083210 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Solyc12g098460.2.1 Solyc12g098460 AP2/ERF and B3 domain-containing transcription factor... 0.04 OrthoFinder output from all 47 species
Spa_g28812 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Spa_g29371 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Tin_g30531 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e000156_P001 NGA3, Zm00001e000156 transcription factor (RAV/NGATHA) 0.01 OrthoFinder output from all 47 species
Zm00001e016956_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 OrthoFinder output from all 47 species
Zm00001e020092_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Zm00001e024165_P001 Zm00001e024165 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e026443_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Zm00001e028111_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Zm00001e032325_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 OrthoFinder output from all 47 species
Zm00001e038099_P001 NGA3, Zm00001e038099 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e039393_P002 Zm00001e039393 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e040214_P001 NGA3, Zm00001e040214 transcription factor (RAV/NGATHA) 0.07 OrthoFinder output from all 47 species
Zm00001e041372_P001 NGA1, Zm00001e041372 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 71 160
No external refs found!