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  5. LOC_Os08g06110.3

LOC_Os08g06110.3 (LHY1, LHY, LOC_Os08g06110)


Aliases : LHY1, LHY, LOC_Os08g06110

Description : transcription factor (MYB-related). circadian clock core oscillator protein (LHY|CCA1)


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06110.3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00261430 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.evening element... 0.03 OrthoFinder output from all 47 species
AMTR_s00001p00272270 LHY1, LHY,... Multi-process regulation.circadian clock.core oscillator... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00072910 RVE2, CIR1,... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G46830 CCA1 circadian clock associated 1 0.04 OrthoFinder output from all 47 species
AT3G09600 No alias Homeodomain-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g34794 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.02 OrthoFinder output from all 47 species
Als_g15171 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.04 OrthoFinder output from all 47 species
Als_g23846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g46995 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01893.t1 Aspi01Gene01893 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31403.t1 RVE1, Aspi01Gene31403 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000277 No alias circadian clock factor *(REVEILLE) & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0005.g008971 RVE1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026930 CCA1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Ceric.04G087900.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.06G032400.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.07G057200.1 RVE1, Ceric.07G057200 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g514400 RVE2, CIR1 RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Ehy_g09144 RVE1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025544001 No alias Multi-process regulation.circadian clock.evening element... 0.03 OrthoFinder output from all 47 species
GSVIVT01027456001 CCA1 Multi-process regulation.circadian clock.core oscillator... 0.08 OrthoFinder output from all 47 species
Len_g19700 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10289482g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g14310.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.02 OrthoFinder output from all 47 species
Msp_g26311 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g42013 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49740 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Smo166821 No alias Multi-process regulation.circadian clock.core oscillator... 0.05 OrthoFinder output from all 47 species
Smo78045 No alias Multi-process regulation.circadian clock.evening element... 0.04 OrthoFinder output from all 47 species
Solyc03g098320.4.1 RVE1, Solyc03g098320 transcription factor (MYB-related) 0.1 OrthoFinder output from all 47 species
Solyc10g005080.3.1 LHY1, LHY, Solyc10g005080 transcription factor (MYB-related). circadian clock core... 0.06 OrthoFinder output from all 47 species
Solyc10g084370.3.1 Solyc10g084370 transcription factor (MYB-related). REVEILLE circadian... 0.07 OrthoFinder output from all 47 species
Zm00001e013333_P002 RVE2, CIR1,... transcription factor (MYB-related) 0.1 OrthoFinder output from all 47 species
Zm00001e021724_P005 LHY1, LHY, Zm00001e021724 transcription factor (MYB-related). circadian clock core... 0.07 OrthoFinder output from all 47 species
Zm00001e023232_P002 Zm00001e023232 transcription factor (MYB-related). REVEILLE circadian... 0.07 OrthoFinder output from all 47 species
Zm00001e040217_P001 LHY1, LHY, Zm00001e040217 circadian clock core oscillator protein (LHY|CCA1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!