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  5. LOC_Os08g06020.1

LOC_Os08g06020.1 (PVA12, LOC_Os08g06020)


Aliases : PVA12, LOC_Os08g06020

Description : contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface


Gene families : OG0000655 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06020.1

Target Alias Description ECC score Gene Family Method Actions
AT2G45140 PVA12 plant VAP homolog 12 0.04 OrthoFinder output from all 47 species
AT3G60600 VAP27, VAP27-1,... vesicle associated protein 0.04 OrthoFinder output from all 47 species
Adi_g058676 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Cre03.g196900 VAP27, VAP27-1,... Vesicle-associated protein 1-1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ehy_g28468 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Gb_34621 No alias contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Mp3g04340.1 PVA12 contact site protein (VAP27) of... 0.05 OrthoFinder output from all 47 species
Msp_g03861 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Msp_g10884 PVA12 contact site protein (VAP27) of... 0.05 OrthoFinder output from all 47 species
Solyc01g090990.3.1 Solyc01g090990 contact site protein (VAP27) of... 0.04 OrthoFinder output from all 47 species
Spa_g06544 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Tin_g02524 VAP27, VAP27-1,... contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Zm00001e021734_P002 PVA12, Zm00001e021734 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000535 MSP_dom 13 116
No external refs found!