LOC_Os08g05840.1 (TOP1BETA, TOP1, LOC_Os08g05840)

Aliases : TOP1BETA, TOP1, LOC_Os08g05840

Description : DNA topoisomerase (TOP1)

Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g05840.1
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
AT5G55300	MGO1, TOP1, TOP1ALPHA	DNA topoisomerase I alpha	0.02	OrthoFinder output from all 47 species
Aev_g03385	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g13391	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G062200.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.22G051300.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.31G042500.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.02	OrthoFinder output from all 47 species
Ehy_g04011	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g04991	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g41412	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Smo109207	TOP1BETA, TOP1	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.03	OrthoFinder output from all 47 species
Solyc07g049720.4.1	MGO1, TOP1,...	DNA topoisomerase (TOP1)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025834	TopoI_C_dom	848	916
IPR008336	TopoI_DNA-bd_euk	373	584
IPR013500	TopoI_cat_euk	587	812

External Links

No external refs found!

LOC_Os08g05840.1 (TOP1BETA, TOP1, LOC_Os08g05840)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation