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  5. LOC_Os08g05560.1

LOC_Os08g05560.1 (LOC_Os08g05560)


Aliases : LOC_Os08g05560

Description : no hits & (original description: none)


Gene families : OG0008195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g05560.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT4G01270 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Als_g10606 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene52706.t1 Aspi01Gene52706 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026963001 No alias No description available 0.08 OrthoFinder output from all 47 species
Gb_07219 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_07220 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10431245g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Smo413480 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc01g095090.3.1 Solyc01g095090 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e040267_P001 Zm00001e040267 no hits & (original description: none) 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 9 60
No external refs found!