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  5. LOC_Os08g05530.1

LOC_Os08g05530.1 (LOC_Os08g05530)


Aliases : LOC_Os08g05530

Description : component Sm-E of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0007427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g05530.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00069690 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
AT2G18740 No alias Small nuclear ribonucleoprotein family protein 0.08 OrthoFinder output from all 47 species
AT4G30330 No alias Small nuclear ribonucleoprotein family protein 0.11 OrthoFinder output from all 47 species
Adi_g022466 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Aspi01Gene28255.t1 Aspi01Gene28255 component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.151 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Cre08.g385200 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.08 OrthoFinder output from all 47 species
Dcu_g25187 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
GSVIVT01008301001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.09 OrthoFinder output from all 47 species
Lfl_g32234 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
MA_118124g0010 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Mp5g07450.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.11 OrthoFinder output from all 47 species
Ore_g40886 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Pir_g13139 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Pp3c14_15210V3.1 Pp3c14_15210 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Pp3c17_6070V3.1 Pp3c17_6070 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015192 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Smo230895 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 19 74
No external refs found!