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  5. LOC_Os08g03310.1

LOC_Os08g03310.1 (LOC_Os08g03310)


Aliases : LOC_Os08g03310

Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g03310.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g073356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109492 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g05049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01030048001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
MA_10426583g0010 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Ore_g25621 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g58297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e039148_P001 Zm00001e039148 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025605 OST-HTH/LOTUS_dom 313 391
IPR000571 Znf_CCCH 263 286
IPR000504 RRM_dom 435 480
No external refs found!