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  5. LOC_Os08g03260.1

LOC_Os08g03260.1 (LOC_Os08g03260)


Aliases : LOC_Os08g03260

Description : E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana (sp|q9lta6|wav3_arath : 125.0)


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g03260.1
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.6 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Dde_g50945 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os02g40664.1 LOC_Os02g40664 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0137.g022462 No alias not classified & original description: CDS=13-2373 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR032838 Vwaint_dom 589 666
IPR002035 VWF_A 243 420
No external refs found!