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  5. LOC_Os07g47720.1

LOC_Os07g47720.1 (LOC_Os07g47720)


Aliases : LOC_Os07g47720

Description : Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana (sp|q9lsk8|pp240_arath : 462.0)


Gene families : OG0018315 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0018315_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g47720.1

Target Alias Description ECC score Gene Family Method Actions
AT3G18020 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Gb_06808 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.05 OrthoFinder output from all 47 species
Solyc03g118790.3.1 Solyc03g118790 Pentatricopeptide repeat-containing protein At3g18020... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 125 154
IPR002885 Pentatricopeptide_repeat 526 555
IPR002885 Pentatricopeptide_repeat 452 501
IPR002885 Pentatricopeptide_repeat 380 428
IPR002885 Pentatricopeptide_repeat 236 284
IPR002885 Pentatricopeptide_repeat 557 600
No external refs found!