1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g47640.1

LOC_Os07g47640.1 (PSBX, LOC_Os07g47640)


Aliases : PSBX, LOC_Os07g47640

Description : component PsbX of PS-II complex


Gene families : OG0002177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002177_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g47640.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00218080 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.12 OrthoFinder output from all 47 species
AT2G06520 PSBX photosystem II subunit X 0.18 OrthoFinder output from all 47 species
Adi_g021165 PSBX component *(PsbX) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g024522 PSBX component *(PsbX) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g024523 PSBX component *(PsbX) of PS-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Adi_g029598 No alias component *(PsbX) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g048424 PSBX component *(PsbX) of PS-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Aev_g41627 PSBX component *(PsbX) of PS-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Aev_g45505 PSBX component *(PsbX) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g10239 PSBX component *(PsbX) of PS-II complex & original description: none 0.13 OrthoFinder output from all 47 species
Ala_g27184 PSBX component *(PsbX) of PS-II complex & original description: none 0.13 OrthoFinder output from all 47 species
Als_g28828 PSBX component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Als_g48977 PSBX component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55991 PSBX component *(PsbX) of PS-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Aob_g14986 PSBX component *(PsbX) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15623 PSBX component *(PsbX) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07528 PSBX component *(PsbX) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene37523.t1 PSBX, Aspi01Gene37523 component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58924.t1 PSBX, Aspi01Gene58924 component *(PsbX) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59149.t1 PSBX, Aspi01Gene59149 component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023498 PSBX component *(PsbX) of PS-II complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0245.g060001 No alias component *(PsbX) of PS-II complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g05544 PSBX component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22045 PSBX component *(PsbX) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.04G046600.1 PSBX, Ceric.04G046600 component *(PsbX) of PS-II complex & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G082200.1 PSBX, Ceric.04G082200 component *(PsbX) of PS-II complex & original... 0.12 OrthoFinder output from all 47 species
Ceric.24G060900.1 PSBX, Ceric.24G060900 component *(PsbX) of PS-II complex & original... 0.1 OrthoFinder output from all 47 species
Dac_g02996 PSBX component *(PsbX) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Dac_g14007 PSBX component *(PsbX) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g17182 PSBX component *(PsbX) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g21257 PSBX component *(PsbX) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g31006 PSBX component *(PsbX) of PS-II complex & original description: none 0.13 OrthoFinder output from all 47 species
Dde_g21199 PSBX component *(PsbX) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22238 PSBX component *(PsbX) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g23441 PSBX component *(PsbX) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01035449001 PSBX Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.12 OrthoFinder output from all 47 species
Gb_07296 PSBX component PsbX of PS-II complex 0.11 OrthoFinder output from all 47 species
Gb_14525 PSBX component PsbX of PS-II complex 0.03 OrthoFinder output from all 47 species
Len_g13373 PSBX component *(PsbX) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Len_g19235 No alias component *(PsbX) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10431 PSBX component *(PsbX) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g15877 No alias component *(PsbX) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17843 No alias component *(PsbX) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
MA_464043g0010 PSBX component PsbX of PS-II complex 0.08 OrthoFinder output from all 47 species
MA_59693g0010 PSBX component PsbX of PS-II complex 0.03 OrthoFinder output from all 47 species
Mp6g21460.1 PSBX component PsbX of PS-II complex 0.09 OrthoFinder output from all 47 species
Msp_g07031 PSBX component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25684 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Pir_g09968 PSBX component *(PsbX) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g48365 PSBX component *(PsbX) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g06188 PSBX component *(PsbX) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Pp3c1_32200V3.1 PSBX, Pp3c1_32200 photosystem II subunit X 0.04 OrthoFinder output from all 47 species
Pp3c5_17290V3.1 PSBX, Pp3c5_17290 photosystem II subunit X 0.05 OrthoFinder output from all 47 species
Ppi_g04809 PSBX component *(PsbX) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g20878 No alias component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g24668 No alias component *(PsbX) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002436 PSBX component *(PsbX) of PS-II complex & original... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0155.g023606 PSBX component *(PsbX) of PS-II complex & original... 0.08 OrthoFinder output from all 47 species
Sam_g04554 No alias component *(PsbX) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g28404 No alias component *(PsbX) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g025600.1.1 PSBX, Solyc05g025600 component PsbX of PS-II complex 0.1 OrthoFinder output from all 47 species
Solyc12g150101.1.1 PSBX, Solyc12g150101 component PsbX of PS-II complex 0.06 OrthoFinder output from all 47 species
Spa_g02683 PSBX component *(PsbX) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g29201 PSBX component *(PsbX) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g35692 PSBX component *(PsbX) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g00078 PSBX component *(PsbX) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g07238 PSBX component *(PsbX) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g16593 PSBX component *(PsbX) of PS-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Zm00001e025856_P001 PSBX, Zm00001e025856 component PsbX of PS-II complex 0.13 OrthoFinder output from all 47 species
Zm00001e035834_P001 PSBX, Zm00001e035834 component PsbX of PS-II complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009518 PSII_PsbX 81 117
No external refs found!