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  5. LOC_Os07g46700.1

LOC_Os07g46700.1 (LOC_Os07g46700)


Aliases : LOC_Os07g46700

Description : RING-HC-class E3 ligase


Gene families : OG0001060 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001060_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g46700.1

Target Alias Description ECC score Gene Family Method Actions
AT1G13195 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g00473 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24377 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g00499 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g014230.3.1 Solyc05g014230 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e004453_P001 Zm00001e004453 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e041948_P002 Zm00001e041948 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!