LOC_Os07g45750.1 (LOC_Os07g45750)

Aliases : LOC_Os07g45750

Description : Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica (sp|q10q08|rfa1b_orysj : 102.0)

Gene families : OG0000992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000992_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g45750.1
Cluster	HCCA: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os01g14200.1	LOC_Os01g14200	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os01g37580.1	LOC_Os01g37580	Replication protein A 70 kDa DNA-binding subunit B...	0.04	OrthoFinder output from all 47 species
LOC_Os09g01380.1	LOC_Os09g01380	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os10g01770.1	LOC_Os10g01770	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os11g44830.1	LOC_Os11g44830	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os12g06230.1	LOC_Os12g06230	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os12g35400.1	LOC_Os12g35400	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
MF	GO:0030597	RNA glycosylase activity	IEP	HCCA
MF	GO:0030598	rRNA N-glycosylase activity	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	990	1360
IPR025476	Helitron_helicase-like	345	528
IPR031657	REPA_OB_2	1625	1714

External Links

No external refs found!

LOC_Os07g45750.1 (LOC_Os07g45750)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation