LOC_Os07g44200.1 (LOC_Os07g44200)

Aliases : LOC_Os07g44200

Description : transcription factor (GeBP)

Gene families : OG0003910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003910_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g44200.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G00270	No alias	DNA-binding storekeeper protein-related transcriptional regulator	0.03	OrthoFinder output from all 47 species
AT4G01260	No alias	DNA-binding storekeeper protein-related transcriptional regulator	0.03	OrthoFinder output from all 47 species
Aob_g29203	No alias	GeBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g42379	No alias	GeBP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc02g014740.2.1	Solyc02g014740	transcription factor (GeBP)	0.03	OrthoFinder output from all 47 species
Solyc02g014750.2.1	Solyc02g014750	transcription factor (GeBP)	0.03	OrthoFinder output from all 47 species
Solyc07g052900.1.1	Solyc07g052900	transcription factor (GeBP)	0.03	OrthoFinder output from all 47 species
Zm00001e001793_P001	Zm00001e001793	transcription factor (GeBP)	0.04	OrthoFinder output from all 47 species
Zm00001e005422_P001	Zm00001e005422	transcription factor (GeBP)	0.02	OrthoFinder output from all 47 species
Zm00001e022112_P001	Zm00001e022112	transcription factor (GeBP)	0.02	OrthoFinder output from all 47 species
Zm00001e038144_P001	Zm00001e038144	transcription factor (GeBP)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
CC	GO:0005666	RNA polymerase III complex	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006383	transcription by RNA polymerase III	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007592	GEBP	84	181

External Links

No external refs found!