1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g43980.1

LOC_Os07g43980.1 (AtRH36, SWA3, RH36,...)


Aliases : AtRH36, SWA3, RH36, LOC_Os07g43980

Description : SSU processome assembly factor (SWA3)


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g43980.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00250280 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.06 OrthoFinder output from all 47 species
Aev_g00934 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037272 No alias not classified & original description: CDS=107-1516 0.03 OrthoFinder output from all 47 species
Azfi_s0215.g058400 AtRH36, SWA3, RH36 not classified & original description: CDS=74-1108 0.04 OrthoFinder output from all 47 species
Ceric.06G021600.1 Ceric.06G021600 not classified & original description: pacid=50619132... 0.04 OrthoFinder output from all 47 species
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Gb_23737 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.02 OrthoFinder output from all 47 species
Gb_36370 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g19410.1 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.04 OrthoFinder output from all 47 species
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc10g005520.3.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.05 OrthoFinder output from all 47 species
Solyc10g007550.3.1 Solyc10g007550 DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e013281_P004 Zm00001e013281 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e035639_P002 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 308 415
IPR011545 DEAD/DEAH_box_helicase_dom 101 268
No external refs found!