LOC_Os07g41740.1 (AL5, LOC_Os07g41740)

Aliases : AL5, LOC_Os07g41740

Description : Alfin-like transcription factor

Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g41740.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g008296	AL1	methylation reader Alfin of PRC1 complex & original...	0.04	OrthoFinder output from all 47 species
Aob_g26626	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene02860.t2	AL2, Aspi01Gene02860	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene16232.t1	AL2, Aspi01Gene16232	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01015122001	AL5	RNA biosynthesis.transcriptional activation.Alfin-like...	0.04	OrthoFinder output from all 47 species
Gb_04583	AL5	Alfin-like transcription factor	0.05	OrthoFinder output from all 47 species
LOC_Os04g36730.1	AL5, LOC_Os04g36730	Alfin-like transcription factor	0.1	OrthoFinder output from all 47 species
Len_g21941	AL1	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Solyc12g096040.3.1	AL4, Solyc12g096040	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Spa_g19171	AL7	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0042393	histone binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021998	Alfin_N	9	136
IPR019787	Znf_PHD-finger	212	259

External Links

No external refs found!