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  5. LOC_Os07g38090.2

LOC_Os07g38090.2 (LOC_Os07g38090)


Aliases : LOC_Os07g38090

Description : mRNA-binding regulatory factor (TZF)


Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g38090.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00207550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
AT2G40140 SZF2, ATSZF2, ZFAR1, CZF1 zinc finger (CCCH-type) family protein 0.05 OrthoFinder output from all 47 species
AT5G58620 No alias zinc finger (CCCH-type) family protein 0.03 OrthoFinder output from all 47 species
Adi_g008196 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Adi_g049591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081004 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ala_g05322 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ala_g09378 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ala_g22406 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aop_g14168 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aop_g21643 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aspi01Gene68944.t1 Aspi01Gene68944 regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g23011 No alias regulatory factor *(TZF) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Ceric.04G078500.1 Ceric.04G078500 regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Ceric.11G085500.1 Ceric.11G085500 regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.23G017000.1 Ceric.23G017000 regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Dac_g10045 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Dac_g14938 No alias regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Dcu_g14003 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Dde_g25533 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ehy_g06047 SZF2, ATSZF2, ZFAR1, CZF1 regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ehy_g08570 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ehy_g16801 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ehy_g18498 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
GSVIVT01024728001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.06 OrthoFinder output from all 47 species
GSVIVT01032807001 SZF2, ATSZF2, ZFAR1, CZF1 RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01033316001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
Gb_20654 No alias mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species
Lfl_g02270 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Lfl_g04930 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Lfl_g28211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30211 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
MA_11306g0010 No alias mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Mp6g00540.1 No alias mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Msp_g04934 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Msp_g08858 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Msp_g13828 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Msp_g15903 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Nbi_g10512 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Nbi_g10809 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Pp3c7_27400V3.1 Pp3c7_27400 CCCH-type zinc finger family protein 0.02 OrthoFinder output from all 47 species
Ppi_g10785 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ppi_g15187 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010425 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Solyc05g052570.3.1 SZF2, ATSZF2,... mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Solyc06g082010.4.1 Solyc06g082010 mRNA-binding regulatory factor (TZF) 0.06 OrthoFinder output from all 47 species
Spa_g08790 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Spa_g14602 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Spa_g43052 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Zm00001e027566_P001 Zm00001e027566 mRNA-binding regulatory factor (TZF) 0.06 OrthoFinder output from all 47 species
Zm00001e029465_P001 Zm00001e029465 mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 68 136
IPR000571 Znf_CCCH 278 300
No external refs found!