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  5. LOC_Os07g34950.1

LOC_Os07g34950.1 (LOC_Os07g34950)


Aliases : LOC_Os07g34950

Description : Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana (sp|q9lvv5|tl15b_arath : 221.0)


Gene families : OG0005320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005320_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g34950.1

Target Alias Description ECC score Gene Family Method Actions
AT5G52970 No alias thylakoid lumen 15.0 kDa protein 0.1 OrthoFinder output from all 47 species
Aob_g02821 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0034.g025415 No alias not classified & original description: CDS=119-883 0.02 OrthoFinder output from all 47 species
Cba_g08322 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021128.8 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre15.g636050 No alias Thylakoid lumenal 15.0 kDa protein 2, chloroplastic... 0.01 OrthoFinder output from all 47 species
GSVIVT01025731001 No alias Thylakoid lumenal 15.0 kDa protein 2, chloroplastic... 0.06 OrthoFinder output from all 47 species
Gb_41289 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g19585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10158783g0010 No alias Thylakoid lumenal 15.0 kDa protein 2, chloroplastic... 0.03 OrthoFinder output from all 47 species
MA_10434952g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Msp_g24996 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc10g084040.2.1 Solyc10g084040 Thylakoid lumenal 15.0 kDa protein 2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Tin_g06428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008701_P001 Zm00001e008701 Thylakoid lumenal 15.0 kDa protein 2, chloroplastic... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!