LOC_Os07g34598.1 (TDP1, LOC_Os07g34598)

Aliases : TDP1, LOC_Os07g34598

Description : tyrosyl-DNA phosphodiesterase (TDP1)

Gene families : OG0005455 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005455_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g34598.1
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
AT5G15170	TDP1	tyrosyl-DNA phosphodiesterase-related	0.03	OrthoFinder output from all 47 species
Adi_g021393	TDP1	tyrosyl-DNA phosphodiesterase *(TDP1) & original...	0.02	OrthoFinder output from all 47 species
Aev_g08680	TDP1	tyrosyl-DNA phosphodiesterase *(TDP1) & original...	0.02	OrthoFinder output from all 47 species
Aop_g14400	TDP1	tyrosyl-DNA phosphodiesterase *(TDP1) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene23965.t2	TDP1, Aspi01Gene23965	tyrosyl-DNA phosphodiesterase *(TDP1) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020684.23	No alias	No description available	0.01	OrthoFinder output from all 47 species
Cre01.g053200	TDP1	Tyrosyl-DNA phosphodiesterase 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Ehy_g25542	TDP1	tyrosyl-DNA phosphodiesterase *(TDP1) & original...	0.02	OrthoFinder output from all 47 species
MA_10170098g0010	TDP1	tyrosyl-DNA phosphodiesterase (TDP1)	0.01	OrthoFinder output from all 47 species
MA_10435500g0010	No alias	Tyrosyl-DNA phosphodiesterase 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Msp_g24606	TDP1	tyrosyl-DNA phosphodiesterase *(TDP1) & original...	0.02	OrthoFinder output from all 47 species
Pp3c20_13830V3.1	TDP1, Pp3c20_13830	tyrosyl-DNA phosphodiesterase-related	0.01	OrthoFinder output from all 47 species
Sam_g07033	No alias	tyrosyl-DNA phosphodiesterase *(TDP1) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e035144_P001	TDP1, Zm00001e035144	tyrosyl-DNA phosphodiesterase (TDP1)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008081	phosphoric diester hydrolase activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006471	obsolete protein ADP-ribosylation	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010347	Tdp1	210	645

External Links

No external refs found!

LOC_Os07g34598.1 (TDP1, LOC_Os07g34598)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation