1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g29320.1

LOC_Os07g29320.1 (LOC_Os07g29320)


Aliases : LOC_Os07g29320

Description : pre-60S ribosomal subunit assembly factor (EBP2)


Gene families : OG0004650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004650_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g29320.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00176430 evm_27.TU.AmTr_v1... Probable rRNA-processing protein EBP2 homolog... 0.03 OrthoFinder output from all 47 species
Aop_g09403 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene27253.t1 Aspi01Gene27253 pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
Ceric.28G019100.1 Ceric.28G019100 pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.12 No alias Probable rRNA-processing protein EBP2 homolog... 0.03 OrthoFinder output from all 47 species
Cre07.g351750 No alias Probable rRNA-processing protein EBP2 homolog... 0.02 OrthoFinder output from all 47 species
Dac_g09923 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01018514001 No alias Probable rRNA-processing protein EBP2 homolog... 0.04 OrthoFinder output from all 47 species
MA_138177g0010 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species
Mp3g18310.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species
Solyc01g006090.3.1 Solyc01g006090 pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species
Solyc01g006170.4.1 Solyc01g006170 pre-60S ribosomal subunit assembly factor (EBP2) 0.08 OrthoFinder output from all 47 species
Zm00001e010357_P001 Zm00001e010357 pre-60S ribosomal subunit assembly factor (EBP2) 0.05 OrthoFinder output from all 47 species
Zm00001e013941_P001 Zm00001e013941 pre-60S ribosomal subunit assembly factor (EBP2) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008610 Ebp2 22 287
No external refs found!