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  5. LOC_Os07g28850.1

LOC_Os07g28850.1 (AGO1, LOC_Os07g28850)


Aliases : AGO1, LOC_Os07g28850

Description : Protein argonaute 18 OS=Oryza sativa subsp. japonica (sp|q69up6|ago18_orysj : 1813.0)


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os07g28850.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00083p00065730 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00118p00122320 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Als_g40616 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28463.t2 Aspi01Gene28463 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59574.t1 AGO1, Aspi01Gene59574 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037455 PNH, AGO10, ZLL miRNA recruiting factor (AGO) of RNA-induced silencing... 0.05 OrthoFinder output from all 47 species
Cba_g07250 PNH, AGO10, ZLL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16426 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77990 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.01 OrthoFinder output from all 47 species
Dac_g29067 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Dde_g07096 AGO9 siRNA-integrating factor *(AGO) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50313 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Dde_g50648 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
GSVIVT01015464001 PNH, AGO10, ZLL Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
GSVIVT01018054001 PNH, AGO10, ZLL Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
Mp6g20400.1 AGO4, OCP11 siRNA-integrating factor (AGO) 0.05 OrthoFinder output from all 47 species
Ore_g36303 AGO9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g40206 AGO5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g08413 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Sam_g27567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39081 No alias regulatory protein *(AGO7) of transacting siRNA pathway... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003165 Piwi 748 1054
IPR014811 ArgoL1 408 455
IPR032474 Argonaute_N 268 392
IPR003100 PAZ_dom 487 590
IPR032472 ArgoL2 600 646
IPR032473 Argonaute_Mid_dom 656 713
No external refs found!