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  5. LOC_Os07g24000.1

LOC_Os07g24000.1 (LOC_Os07g24000)


Aliases : LOC_Os07g24000

Description : Membrane protein PM19L OS=Oryza sativa subsp. japonica (sp|q6l4d2|pm19l_orysj : 212.0)


Gene families : OG0000473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000473_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g24000.1
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AT1G04560 No alias AWPM-19-like family protein 0.2 OrthoFinder output from all 47 species
Ala_g16926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05322 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g35491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007412 No alias not classified & original description: CDS=218-754 0.08 OrthoFinder output from all 47 species
Azfi_s0050.g031077 No alias not classified & original description: CDS=1-387 0.09 OrthoFinder output from all 47 species
Ceric.30G074200.1 Ceric.30G074200 not classified & original description: pacid=50608798... 0.03 OrthoFinder output from all 47 species
Ceric.37G005000.1 Ceric.37G005000 not classified & original description: pacid=50616787... 0.02 OrthoFinder output from all 47 species
Ceric.37G005100.1 Ceric.37G005100 not classified & original description: pacid=50616791... 0.03 OrthoFinder output from all 47 species
Ceric.37G005200.1 Ceric.37G005200 not classified & original description: pacid=50615572... 0.03 OrthoFinder output from all 47 species
Dde_g01167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027944001 No alias Membrane protein PM19L OS=Oryza sativa subsp. japonica 0.09 OrthoFinder output from all 47 species
GSVIVT01031072001 No alias Membrane protein PM19L OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Gb_30286 No alias Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.06 OrthoFinder output from all 47 species
Len_g53674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32766 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_101266g0010 No alias Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_8902028g0010 No alias Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Mp3g04480.1 No alias Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
Mp3g04490.1 No alias Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.06 OrthoFinder output from all 47 species
Mp3g04500.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g11224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24316 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06734 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29334 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007798 No alias not classified & original description: CDS=1-543 0.03 OrthoFinder output from all 47 species
Solyc05g053160.3.1 Solyc05g053160 Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.19 OrthoFinder output from all 47 species
Solyc09g090800.2.1 Solyc09g090800 Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.19 OrthoFinder output from all 47 species
Spa_g02439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033373_P001 Zm00001e033373 Membrane protein PM19L OS=Oryza sativa subsp. japonica... 0.24 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
InterPro domains Description Start Stop
IPR008390 AWPM-19 14 142
No external refs found!