LOC_Os07g20150.1 (LOC_Os07g20150)

Aliases : LOC_Os07g20150

Description : no hits & (original description: none)

Gene families : OG0005774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005774_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g20150.1

Target	Alias	Description	ECC score	Gene Family Method
Aop_g17446	No alias	component *(mS22) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene28649.t1	Aspi01Gene28649	component *(mS22) of small mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.15G029500.1	Ceric.15G029500	component *(mS22) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.15G029800.1	Ceric.15G029800	not classified & original description: pacid=50639591...	0.04	OrthoFinder output from all 47 species
Cre05.g237600	No alias	No description available	0.01	OrthoFinder output from all 47 species
Msp_g14874	No alias	component *(mS22) of small mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ore_g25329	No alias	component *(mS22) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g10527	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g11854	No alias	component *(mS22) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc08g082880.4.1	Solyc08g082880	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015324	Ribosomal_Rsm22-like	116	375

External Links

No external refs found!

LOC_Os07g20150.1 (LOC_Os07g20150)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation