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  5. LOC_Os07g19494.1

LOC_Os07g19494.1 (LOC_Os07g19494)


Aliases : LOC_Os07g19494

Description : NUP54 nucleoporin of nuclear pore complex


Gene families : OG0005001 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005001_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g19494.1

Target Alias Description ECC score Gene Family Method Actions
Ceric.29G080400.1 Ceric.29G080400 nucleoporin of nuclear pore complex *(NUP54) & original... 0.02 OrthoFinder output from all 47 species
Cre12.g542950 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Gb_32959 No alias NUP54 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Mp5g24480.1 No alias NUP54 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Zm00001e033312_P001 Zm00001e033312 NUP54 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025712 Nup54_alpha-helical_dom 179 323
No external refs found!