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  5. LOC_Os07g17390.1

LOC_Os07g17390.1 (LOC_Os07g17390)


Aliases : LOC_Os07g17390

Description : PPD1 protein involved in PS-I assembly


Gene families : OG0006534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g17390.1

Target Alias Description ECC score Gene Family Method Actions
AT4G15510 No alias Photosystem II reaction center PsbP family protein 0.1 OrthoFinder output from all 47 species
Ala_g08703 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene47777.t1 Aspi01Gene47777 protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g71868 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Cre08.g362900 No alias Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
Dcu_g37634 No alias protein involved in PS-I assembly *(PPD1) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01031268001 No alias Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
Lfl_g08661 No alias protein involved in PS-I assembly *(PPD1) & original... 0.11 OrthoFinder output from all 47 species
MA_81231g0010 No alias PPD1 protein involved in PS-I assembly 0.05 OrthoFinder output from all 47 species
Mp1g27590.1 No alias PPD1 protein involved in PS-I assembly 0.13 OrthoFinder output from all 47 species
Msp_g26208 No alias protein involved in PS-I assembly *(PPD1) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g19709 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Pir_g10011 No alias protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g19602 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001177 No alias protein involved in PS-I assembly *(PPD1) & original... 0.05 OrthoFinder output from all 47 species
Solyc01g106090.3.1 Solyc01g106090 PPD1 protein involved in PS-I assembly 0.08 OrthoFinder output from all 47 species
Spa_g12584 No alias protein involved in PS-I assembly *(PPD1) & original... 0.08 OrthoFinder output from all 47 species
Tin_g00363 No alias protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e002887_P002 Zm00001e002887 PPD1 protein involved in PS-I assembly 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 69 245
No external refs found!