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Aliases : LOC_Os07g12140
Description : RNA editing factor (POCO)
Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os07g12140.1 | |
| Cluster | HCCA: Cluster_60 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00095p00027730 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80270,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00135p00094440 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g09450,... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G02370 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G60770 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G80270 | PPR596 | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | OrthoFinder output from all 47 species | |
| AT4G01990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| AT4G02820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g030656 | No alias | RNA editing factor *(POCO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g057168 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g04726 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g30824 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g09907 | No alias | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g11231 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.31G052700.1 | Ceric.31G052700 | RNA editing factor *(POCO) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g21533 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g01745 | PPR596 | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g08858 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g14866 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01002065001 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01006654001 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01020533001 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01024495001 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01031246001 | No alias | Pentatricopeptide repeat-containing protein At4g01990,... | 0.08 | OrthoFinder output from all 47 species | |
| GSVIVT01033642001 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_03507 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_03508 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_20238 | No alias | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_27873 | No alias | RNA editing factor (POCO) | 0.05 | OrthoFinder output from all 47 species | |
| Len_g25974 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g07782 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_10431989g0010 | No alias | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| MA_492314g0010 | No alias | RNA editing factor (POCO) | 0.02 | OrthoFinder output from all 47 species | |
| MA_58210g0010 | No alias | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| MA_7558g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
| MA_77400g0010 | No alias | Pentatricopeptide repeat-containing protein At1g15480,... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g13070 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g02315 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo416459 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.02 | OrthoFinder output from all 47 species | |
| Smo420704 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g079320.4.1 | Solyc01g079320 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc01g100580.3.1 | Solyc01g100580 | Pentatricopeptide repeat-containing protein At4g01990,... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc02g078330.3.1 | Solyc02g078330 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g078350.3.1 | Solyc02g078350 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g005140.3.1 | Solyc06g005140 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g071900.3.1 | Solyc06g071900 | Pentatricopeptide repeat-containing protein At1g07590,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g054090.3.1 | Solyc07g054090 | Pentatricopeptide repeat-containing protein At2g20710,... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g047370.2.1 | Solyc10g047370 | Pentatricopeptide repeat-containing protein At5g09450,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g006380.2.1 | Solyc11g006380 | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g020050.2.1 | PPR596, Solyc12g020050 | RNA editing factor (POCO) | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g11271 | No alias | RNA editing factor *(POCO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g37476 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e012594_P001 | Zm00001e012594 | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e017396_P001 | PPR596, Zm00001e017396 | RNA editing factor (POCO) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025470_P001 | PPR596, Zm00001e025470 | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e026211_P002 | Zm00001e026211 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e036620_P001 | Zm00001e036620 | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| No external refs found! |