1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g10660.1

LOC_Os07g10660.1 (LOC_Os07g10660)


Aliases : LOC_Os07g10660

Description : component RPS2 of SSU proteome


Gene families : OG0001457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g10660.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00212950 XW6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
AT1G58684 No alias Ribosomal protein S5 family protein 0.15 OrthoFinder output from all 47 species
AT1G58983 No alias Ribosomal protein S5 family protein 0.15 OrthoFinder output from all 47 species
AT1G59359 No alias Ribosomal protein S5 family protein 0.16 OrthoFinder output from all 47 species
AT2G41840 No alias Ribosomal protein S5 family protein 0.25 OrthoFinder output from all 47 species
AT3G57490 No alias Ribosomal protein S5 family protein 0.03 OrthoFinder output from all 47 species
Adi_g075067 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aev_g07498 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g07831 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g12737 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g12987 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Als_g47982 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g02040 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Aop_g09364 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Aspi01Gene36209.t1 Aspi01Gene36209 component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene36212.t1 Aspi01Gene36212 component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0110.g045473 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0377.g067313 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g21908 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.30G013900.1 Ceric.30G013900 component *(uS5) of small ribosomal-subunit (SSU)... 0.2 OrthoFinder output from all 47 species
Ceric.31G046200.1 Ceric.31G046200 component *(uS5) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.135 XW6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Cre01.g039250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Dac_g00614 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Dde_g04227 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01033299001 No alias 40S ribosomal protein S2-4 OS=Arabidopsis thaliana 0.15 OrthoFinder output from all 47 species
Gb_04606 No alias component RPS2 of SSU proteome 0.06 OrthoFinder output from all 47 species
Gb_04608 No alias component RPS2 of SSU proteome 0.16 OrthoFinder output from all 47 species
Gb_04609 No alias component RPS2 of SSU proteome 0.13 OrthoFinder output from all 47 species
Len_g11361 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g00692 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g25707 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_158470g0010 No alias component RPS2 of SSU proteome 0.06 OrthoFinder output from all 47 species
Mp5g04380.1 No alias component RPS2 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp5g05010.1 No alias component RPS2 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp5g15970.1 No alias component RPS2 of SSU proteome 0.13 OrthoFinder output from all 47 species
Msp_g07675 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Msp_g10873 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Nbi_g03400 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Nbi_g03516 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Ore_g03514 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g17004 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g11571 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g29029 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Pir_g29631 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g57889 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c20_18740V3.1 Pp3c20_18740 Ribosomal protein S5 family protein 0.11 OrthoFinder output from all 47 species
Pp3c24_5780V3.1 Pp3c24_5780 Ribosomal protein S5 family protein 0.1 OrthoFinder output from all 47 species
Ppi_g24410 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Sam_g08630 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g25636 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Sam_g26796 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Smo67484 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Solyc04g063290.3.1 Solyc04g063290 component RPS2 of SSU proteome 0.2 OrthoFinder output from all 47 species
Solyc04g074300.3.1 Solyc04g074300 component RPS2 of SSU proteome 0.17 OrthoFinder output from all 47 species
Spa_g13171 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Spa_g14513 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Spa_g17385 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g38186 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g40249 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Spa_g47984 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Spa_g50366 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Spa_g57025 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Tin_g01630 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Zm00001e006090_P001 Zm00001e006090 component RPS2 of SSU proteome 0.19 OrthoFinder output from all 47 species
Zm00001e011816_P001 Zm00001e011816 component RPS2 of SSU proteome 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 88 152
IPR005324 Ribosomal_S5_C 171 237
No external refs found!