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  5. LOC_Os07g10250.1

LOC_Os07g10250.1 (LOC_Os07g10250)


Aliases : LOC_Os07g10250

Description : DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica (sp|q6z4k6|rh52b_orysj : 860.0)


Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g10250.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00136740 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00133p00101570 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G58510 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g103003 No alias sRNA cargo-loAding helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Ala_g21332 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Aop_g27590 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.05 OrthoFinder output from all 47 species
Azfi_s0333.g065464 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Ceric.08G007800.1 Ceric.08G007800 sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.5 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Dcu_g19139 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
GSVIVT01001348001 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01033437001 No alias DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_137324g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_181586g0010 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Mp2g08020.1 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ore_g30360 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Ppi_g29242 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Sam_g19979 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Smo267628 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc03g052980.3.1 Solyc03g052980 DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Tin_g14052 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Zm00001e011396_P001 Zm00001e011396 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e011397_P001 Zm00001e011397 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 193 372
IPR001650 Helicase_C 409 523
No external refs found!