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  5. LOC_Os07g09680.1

LOC_Os07g09680.1 (ATRABE1E, ATRAB8E,...)


Aliases : ATRABE1E, ATRAB8E, RABE1e, LOC_Os07g09680

Description : E-class RAB GTPase


Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g09680.1

Target Alias Description ECC score Gene Family Method Actions
Azfi_s1239.g100218 ATRABE1C,... E-class RAB GTPase & original description: CDS=257-895 0.03 OrthoFinder output from all 47 species
Cba_g07305 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25309 No alias E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016596001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Gb_38643 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Len_g16013 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25496 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000647 ATRABE1D,... not classified & original description: CDS=1-615 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010582 ATRABE1C,... not classified & original description: CDS=1-537 0.03 OrthoFinder output from all 47 species
Sam_g30325 No alias E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Smo437530 ATRABE1C,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Solyc10g086350.2.1 Solyc10g086350 E-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Tin_g15580 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027248_P001 ATRABE1C,... E-class RAB GTPase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004668 protein-arginine deiminase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009445 putrescine metabolic process IEP HCCA
BP GO:0009446 putrescine biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 17 177
No external refs found!