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  5. LOC_Os07g07690.1

LOC_Os07g07690.1 (LOC_Os07g07690)


Aliases : LOC_Os07g07690

Description : PHD finger transcription factor


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g07690.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Aev_g08216 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.02 OrthoFinder output from all 47 species
Ala_g16047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15069.t1 Aspi01Gene15069 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25981.t1 Aspi01Gene25981 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53152.t1 Aspi01Gene53152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53154.t1 Aspi01Gene53154 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16245 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g22982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G070400.1 Ceric.19G070400 not classified & original description: pacid=50576012... 0.03 OrthoFinder output from all 47 species
Ceric.35G031200.1 Ceric.35G031200 not classified & original description: pacid=50581090... 0.04 OrthoFinder output from all 47 species
Cre08.g386000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 OrthoFinder output from all 47 species
Gb_10246 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Len_g08378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02467 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Nbi_g13767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.04 OrthoFinder output from all 47 species
Ore_g28861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008129 No alias not classified & original description: CDS=562-3384 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.02 OrthoFinder output from all 47 species
Sam_g15944 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g005170.3.1 Solyc03g005170 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc03g071550.3.1 Solyc03g071550 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g082040.2.1 Solyc06g082040 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc09g065340.3.1 Solyc09g065340 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g04858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e032904_P002 Zm00001e032904 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 621 694
No external refs found!