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  5. LOC_Os07g05050.1

LOC_Os07g05050.1 (PMH2, ATRH53, LOC_Os07g05050)


Aliases : PMH2, ATRH53, LOC_Os07g05050

Description : RNA helicase (PMH)


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g05050.1

Target Alias Description ECC score Gene Family Method Actions
AT3G22330 PMH2, ATRH53 putative mitochondrial RNA helicase 2 0.04 OrthoFinder output from all 47 species
Adi_g042867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14243 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18513 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54441.t1 emb1138, Aspi01Gene54441 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene72752.t1 PRH75, Aspi01Gene72752 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016145 PRH75 not classified & original description: CDS=1-2178 0.02 OrthoFinder output from all 47 species
Dcu_g16656 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g08659 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38604 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10206082g0010 PMH2, ATRH53 RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Sam_g26329 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Solyc07g044760.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 108 276
IPR001650 Helicase_C 314 422
No external refs found!