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  5. LOC_Os07g01130.1

LOC_Os07g01130.1 (EMB1444, LOC_Os07g01130)


Aliases : EMB1444, LOC_Os07g01130

Description : Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana (sp|q9ca58|pp120_arath : 750.0)


Gene families : OG0001070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g01130.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00176130 LHW,... Transcription factor LHW OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g055836 CPUORF7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03494 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028300001 EMB1444 Transcription factor EMB1444 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_10436087g0020 LHW transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g23948 EMB1444 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15021 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032637_P002 LHW, Zm00001e032637 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 87 131
IPR002885 Pentatricopeptide_repeat 253 302
IPR002885 Pentatricopeptide_repeat 358 407
IPR002885 Pentatricopeptide_repeat 572 617
IPR002885 Pentatricopeptide_repeat 463 512
IPR002885 Pentatricopeptide_repeat 424 456
IPR002885 Pentatricopeptide_repeat 319 350
IPR002885 Pentatricopeptide_repeat 530 560
IPR002885 Pentatricopeptide_repeat 215 248
IPR025610 MYC/MYB_N 764 921
IPR002885 Pentatricopeptide_repeat 57 76
IPR002885 Pentatricopeptide_repeat 152 178
No external refs found!