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  5. LOC_Os06g48660.1

LOC_Os06g48660.1 (LOC_Os06g48660)


Aliases : LOC_Os06g48660

Description : Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana (sp|o23337|pp311_arath : 271.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g48660.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g033460 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g118106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03203 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g18669 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30704 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31748 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g33107 DOT4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g62404 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene24054.t1 OTP82, Aspi01Gene24054 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36977.t1 Aspi01Gene36977 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61369.t1 CRR22, Aspi01Gene61369 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene66051.t1 OTP84, Aspi01Gene66051 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene68744.t1 Aspi01Gene68744 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012398 No alias not classified & original description: CDS=1-3681 0.01 OrthoFinder output from all 47 species
Cba_g07528 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g39568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17454 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Msp_g34233 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02439 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16177 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22848 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30093 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30610 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04645 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13340 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30938 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g44678 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56353 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19797 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 350 374
IPR002885 Pentatricopeptide_repeat 315 341
IPR002885 Pentatricopeptide_repeat 147 169
IPR002885 Pentatricopeptide_repeat 250 271
IPR002885 Pentatricopeptide_repeat 278 308
IPR002885 Pentatricopeptide_repeat 75 92
No external refs found!